IL_5AJ0_263

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACUAG*CUUCU

Length

10 nucleotides

Bulged bases

5AJ0|1|B1|C|1403, 5AJ0|1|B1|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_263 not in the Motif Atlas

Homologous match to IL_8CRE_459

Geometric discrepancy: 0.202

The information below is about IL_8CRE_459

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ0|1|B1|A|1402
5AJ0|1|B1|C|1403
5AJ0|1|B1|U|1404
5AJ0|1|B1|A|1405
5AJ0|1|B1|G|1406
*
5AJ0|1|B1|C|1440
5AJ0|1|B1|U|1441
5AJ0|1|B1|U|1442
5AJ0|1|B1|C|1443
5AJ0|1|B1|U|1444

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BQ

40S ribosomal protein S16

Chain BU

40S ribosomal protein S20