IL_5AJ0_266

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_266 not in the Motif Atlas

Geometric match to IL_1ZH5_001

Geometric discrepancy: 0.1336

The information below is about IL_1ZH5_001

Detailed Annotation

Isolated non-canonical cWW

Broad Annotation

No text annotation

Motif group

IL_64928.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

263

Unit IDs

5AJ0|1|B1|A|1537
5AJ0|1|B1|C|1538
5AJ0|1|B1|U|1539
*
5AJ0|1|B1|A|1594
5AJ0|1|B1|U|1595
5AJ0|1|B1|U|1596

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BF

40S ribosomal protein S5

Chain BS

40S ribosomal protein S18

Chain BT

40S ribosomal protein S19

Chain BZ

40S ribosomal protein S25