IL_5AJ0_267

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

5AJ0|1|B1|A|1580, 5AJ0|1|B1|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ0|1|B1|G|1550
5AJ0|1|B1|U|1551
5AJ0|1|B1|G|1552
5AJ0|1|B1|C|1553
5AJ0|1|B1|C|1554
5AJ0|1|B1|U|1555
5AJ0|1|B1|A|1556
5AJ0|1|B1|C|1557
5AJ0|1|B1|C|1558
*
5AJ0|1|B1|G|1577
5AJ0|1|B1|U|1578
5AJ0|1|B1|A|1579
5AJ0|1|B1|A|1580
5AJ0|1|B1|C|1581
5AJ0|1|B1|C|1582

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BD

40S ribosomal protein S3

Chain BK

40S ribosomal protein S10

Chain BU

40S ribosomal protein S20

Chain Bd

40S ribosomal protein S29