IL_5AJ0_293

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AC*GGU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_293 not in the Motif Atlas

Geometric match to IL_7KGA_003

Geometric discrepancy: 0.1699

The information below is about IL_7KGA_003

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

5AJ0|1|A2|A|1078
5AJ0|1|A2|C|1079
*
5AJ0|1|A2|G|1182
5AJ0|1|A2|G|1183
5AJ0|1|A2|U|1184

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AS

60S ribosomal protein L18a

Chain AT

60S ribosomal protein L21