IL_5AJ0_295

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GC*GGU

Length

5 nucleotides

Bulged bases

5AJ0|1|A2|G|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_295 not in the Motif Atlas

Homologous match to IL_8C3A_032

Geometric discrepancy: 0.2143

The information below is about IL_8C3A_032

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

5AJ0|1|A2|G|1532
5AJ0|1|A2|C|1533
*
5AJ0|1|A2|G|1558
5AJ0|1|A2|G|1559
5AJ0|1|A2|U|1560

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8

Chain AR

60S ribosomal protein L19

Chain Ap

60S ribosomal protein L37a