IL_5AJ0_296

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

5AJ0|1|A2|G|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_296 not in the Motif Atlas

Geometric match to IL_7D7W_002

Geometric discrepancy: 0.3154

The information below is about IL_7D7W_002

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

5AJ0|1|A2|C|2630
5AJ0|1|A2|G|2631
5AJ0|1|A2|C|2632
*
5AJ0|1|A2|G|2660
5AJ0|1|A2|G|2661

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Ag

60S ribosomal protein L34

Chain Ap

60S ribosomal protein L37a