IL_5AJ0_297
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ0_297 not in the Motif Atlas
- Homologous match to IL_8C3A_484
- Geometric discrepancy: 0.0845
- The information below is about IL_8C3A_484
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.2
- Basepair signature
- cWW-cWW-L-cWW-L-R-L-R-L-L
- Number of instances in this motif group
- 3
Unit IDs
5AJ0|1|A2|G|2826
5AJ0|1|A2|G|2827
5AJ0|1|A2|A|2828
5AJ0|1|A2|A|2829
5AJ0|1|A2|G|2830
5AJ0|1|A2|U|2831
5AJ0|1|A2|C|2832
5AJ0|1|A2|G|2833
5AJ0|1|A2|G|2834
*
5AJ0|1|A2|C|3808
5AJ0|1|A2|U|3809
5AJ0|1|A2|G|3810
5AJ0|1|A2|U|3811
5AJ0|1|A2|C|3812
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AB
- 60S ribosomal protein L3
- Chain AV
- 60S ribosomal protein L23
Coloring options: