IL_5AJ0_299

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUG*CAAUG

Length

8 nucleotides

Bulged bases

5AJ0|1|A2|A|4618, 5AJ0|1|A2|U|4619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_299 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.233

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5AJ0|1|A2|U|4603
5AJ0|1|A2|U|4604
5AJ0|1|A2|G|4605
*
5AJ0|1|A2|C|4616
5AJ0|1|A2|A|4617
5AJ0|1|A2|A|4618
5AJ0|1|A2|U|4619
5AJ0|1|A2|G|4620

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AR

60S ribosomal protein L19

Chain Ad

60S ribosomal protein L31