IL_5AJ0_304

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

5AJ0|1|B1|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_304 not in the Motif Atlas

Geometric match to IL_8C3A_140

Geometric discrepancy: 0.3221

The information below is about IL_8C3A_140

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5AJ0|1|B1|G|925
5AJ0|1|B1|A|926
*
5AJ0|1|B1|U|1015
5AJ0|1|B1|U|1016
5AJ0|1|B1|U|1017

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BN

40S ribosomal protein S13

Chain Bb

40S ribosomal protein S27