IL_5AJ0_305

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACCAC*GUCCCU

Length

11 nucleotides

Bulged bases

5AJ0|1|B1|C|1215, 5AJ0|1|B1|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ0|1|B1|A|1214
5AJ0|1|B1|C|1215
5AJ0|1|B1|C|1216
5AJ0|1|B1|A|1217
5AJ0|1|B1|C|1218
*
5AJ0|1|B1|G|1680
5AJ0|1|B1|U|1681
5AJ0|1|B1|C|1682
5AJ0|1|B1|C|1683
5AJ0|1|B1|C|1684
5AJ0|1|B1|U|1685

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BF

40S ribosomal protein S5

Chain BQ

40S ribosomal protein S16

Chain BU

40S ribosomal protein S20

Chain Bc

40S ribosomal protein S28

Chain Bv

Transfer RNA; tRNA

Chain Bw

Transfer RNA; tRNA