IL_5AJ0_306

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGACAGGAUUG*CUCGAUUCCG

Length

22 nucleotides

Bulged bases

5AJ0|1|B1|A|1284, 5AJ0|1|B1|G|1285, 5AJ0|1|B1|G|1286, 5AJ0|1|B1|A|1287, 5AJ0|1|B1|U|1288, 5AJ0|1|B1|A|1313, 5AJ0|1|B1|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ0|1|B1|C|1279
5AJ0|1|B1|G|1280
5AJ0|1|B1|G|1281
5AJ0|1|B1|A|1282
5AJ0|1|B1|C|1283
5AJ0|1|B1|A|1284
5AJ0|1|B1|G|1285
5AJ0|1|B1|G|1286
5AJ0|1|B1|A|1287
5AJ0|1|B1|U|1288
5AJ0|1|B1|U|1289
5AJ0|1|B1|G|1290
*
5AJ0|1|B1|C|1309
5AJ0|1|B1|U|1310
5AJ0|1|B1|C|1311
5AJ0|1|B1|G|1312
5AJ0|1|B1|A|1313
5AJ0|1|B1|U|1314
5AJ0|1|B1|U|1315
5AJ0|1|B1|C|1316
5AJ0|1|B1|C|1317
5AJ0|1|B1|G|1318

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BK

40S ribosomal protein S10

Chain BM

40S ribosomal protein S12

Chain Bd

40S ribosomal protein S29

Chain Bf

Ubiquitin-40S ribosomal protein S27a