IL_5AJ0_309

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

5AJ0|1|B1|G|1497

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_309 not in the Motif Atlas

Geometric match to IL_8ZA0_002

Geometric discrepancy: 0.3882

The information below is about IL_8ZA0_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

5AJ0|1|B1|U|1333
5AJ0|1|B1|G|1334
*
5AJ0|1|B1|U|1496
5AJ0|1|B1|G|1497
5AJ0|1|B1|A|1498

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BD

40S ribosomal protein S3

Chain BK

40S ribosomal protein S10

Chain BU

40S ribosomal protein S20

Chain Bd

40S ribosomal protein S29