IL_5AJ3_014

3D structure

PDB id

5AJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the small subunit of the mammalian mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGGUAAAUCU*AUUA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

116

Unit IDs

5AJ3|1|A|U|230
5AJ3|1|A|G|231
5AJ3|1|A|G|232
5AJ3|1|A|U|233
5AJ3|1|A|A|234
5AJ3|1|A|A|235
5AJ3|1|A|A|236
5AJ3|1|A|U|237
5AJ3|1|A|C|238
5AJ3|1|A|U|239
*
5AJ3|1|A|A|264
5AJ3|1|A|U|265
5AJ3|1|A|U|266
5AJ3|1|A|A|267

Current chains

Chain A

MITORIBOSOMAL 12S RRNA

Nearby chains

Chain E

MITORIBOSOMAL PROTEIN US5M, MRPS5

Chain L

MITORIBOSOMAL PROTEIN US12M, MRPS12

Chain i

MITORIBOSOMAL PROTEIN MS33, MRPS33

Chain p

MITORIBOSOMAL PROTEIN MS40, MRPS18B