IL_5AJ3_029
3D structure
- PDB id
- 5AJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the small subunit of the mammalian mitoribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UAUAC*GUG
- Length
- 8 nucleotides
- Bulged bases
- 5AJ3|1|A|U|614
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ3_029 not in the Motif Atlas
- Homologous match to IL_4LFB_044
- Geometric discrepancy: 0.1438
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_76319.5
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
5AJ3|1|A|U|612
5AJ3|1|A|A|613
5AJ3|1|A|U|614
5AJ3|1|A|A|615
5AJ3|1|A|C|616
*
5AJ3|1|A|G|689
5AJ3|1|A|U|690
5AJ3|1|A|G|691
Current chains
- Chain A
- MITORIBOSOMAL 12S RRNA
Nearby chains
- Chain C
- MITORIBOSOMAL PROTEIN US3M, MRPS24
- Chain E
- MITORIBOSOMAL PROTEIN US5M, MRPS5
- Chain J
- MITORIBOSOMAL PROTEIN US10M, MRPS10
- Chain N
- MITORIBOSOMAL PROTEIN US14M, MRPS14
- Chain X
- MRNA
- Chain Y
- P-SITE AND A-SITE TRNA
- Chain i
- MITORIBOSOMAL PROTEIN MS33, MRPS33
Coloring options: