IL_5AJ4_010

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAA*UAA

Length

7 nucleotides

Bulged bases

5AJ4|1|AA|U|187

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_010 not in the Motif Atlas

Geometric match to IL_4AOB_005

Geometric discrepancy: 0.1978

The information below is about IL_4AOB_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

5AJ4|1|AA|U|186
5AJ4|1|AA|U|187
5AJ4|1|AA|A|188
5AJ4|1|AA|A|189
*
5AJ4|1|AA|U|210
5AJ4|1|AA|A|211
5AJ4|1|AA|A|212

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AP

MITORIBOSOMAL PROTEIN BS16M, MRPS16

Chain Ac

MITORIBOSOMAL PROTEIN MS25, MRPS25