IL_5AJ4_013

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_013 not in the Motif Atlas

Geometric match to IL_3LA5_001

Geometric discrepancy: 0.1291

The information below is about IL_3LA5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

5AJ4|1|AA|G|226
5AJ4|1|AA|A|227
5AJ4|1|AA|G|228
*
5AJ4|1|AA|C|269
5AJ4|1|AA|C|270
5AJ4|1|AA|C|271

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AE

MITORIBOSOMAL PROTEIN US5M, MRPS5

Chain AL

MITORIBOSOMAL PROTEIN US12M, MRPS12

Chain Ap

28S RIBOSOMAL PROTEIN S18B, MITOCHONDRIAL