IL_5AJ4_023

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUACUACUCG*CCUAAAAC

Length

18 nucleotides

Bulged bases

5AJ4|1|AA|C|494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_023 not in the Motif Atlas

Geometric match to IL_6UFM_002

Geometric discrepancy: 0.3932

The information below is about IL_6UFM_002

Detailed Annotation

10x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_22278.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

5AJ4|1|AA|G|491
5AJ4|1|AA|U|492
5AJ4|1|AA|A|493
5AJ4|1|AA|C|494
5AJ4|1|AA|U|495
5AJ4|1|AA|A|496
5AJ4|1|AA|C|497
5AJ4|1|AA|U|498
5AJ4|1|AA|C|499
5AJ4|1|AA|G|500
*
5AJ4|1|AA|C|507
5AJ4|1|AA|C|508
5AJ4|1|AA|U|509
5AJ4|1|AA|A|510
5AJ4|1|AA|A|511
5AJ4|1|AA|A|512
5AJ4|1|AA|A|513
5AJ4|1|AA|C|514

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AL

MITORIBOSOMAL PROTEIN US12M, MRPS12

Chain AO

MITORIBOSOMAL PROTEIN US15M, MRPS15

Chain An

MITORIBOSOMAL PROTEIN MS38, MRPS38