Motif IL_22278.1 Version IL_22278.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 1-18 | 2-17 | 3-16 | 4-5 | 5-15 | 6-14 | 9-12 | 10-11 | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6UFM_002 | 6UFM | 0.1031 | 0 | 10x8 Sarcin-Ricin; G-bulge | B | RNA (98-MER) | U | 64 | C | 65 | A | 66 | G | 67 | U | 68 | A | 69 | G | 70 | A | 71 | A | 72 | C | 73 | * | G | 34 | A | 35 | A | 36 | G | 37 | A | 38 | A | 39 | C | 40 | G | 41 | cWW | tSH | tHH | cSH | tWH | tHS | cWw | cWW |
| 2 | IL_6UFG_002 | 6UFG | 0.0000 | 0 | 10x8 Sarcin-Ricin; G-bulge | A | RNA (166-MER) | C | 53 | C | 54 | A | 55 | G | 56 | U | 57 | A | 58 | G | 59 | A | 60 | A | 61 | C | 62 | * | G | 34 | A | 35 | A | 36 | G | 37 | A | 38 | A | 39 | C | 40 | G | 41 | cWW | ntSH | tHH | cSH | tWH | tHS | cWw | cWW |
| 3 | IL_6UFH_002 | 6UFH | 0.0945 | 0 | 10x8 Sarcin-Ricin; G-bulge | A | RNA (167-MER) | C | 54 | C | 55 | A | 56 | G | 57 | U | 58 | A | 59 | G | 60 | A | 61 | A | 62 | C | 63 | * | G | 34 | A | 35 | A | 36 | G | 37 | A | 38 | A | 39 | C | 40 | G | 41 | cWW | ntSH | ntHH | ncSH | tWH | tHS | ncWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAGUAGAAC*GAAGAACG | 2 |
| UCAGUAGAAC*GAAGAACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAGUAGAA*AAGAAC | 3 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- 10x8 Sarcin-Ricin; G-bulge (3)
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW
- Heat map statistics
- Min 0.09 | Avg 0.07 | Max 0.12
Coloring options: