IL_5AJ4_034
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CC*GAACAAUAG
- Length
- 11 nucleotides
- Bulged bases
- 5AJ4|1|AA|A|647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ4_034 not in the Motif Atlas
- Geometric match to IL_1R3E_002
- Geometric discrepancy: 0.1871
- The information below is about IL_1R3E_002
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_05670.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
5AJ4|1|AA|C|633
5AJ4|1|AA|C|634
*
5AJ4|1|AA|G|643
5AJ4|1|AA|A|644
5AJ4|1|AA|A|645
5AJ4|1|AA|C|646
5AJ4|1|AA|A|647
5AJ4|1|AA|A|648
5AJ4|1|AA|U|649
5AJ4|1|AA|A|650
5AJ4|1|AA|G|651
Current chains
- Chain AA
- MITORIBOSOMAL 12S Ribosomal RNA
Nearby chains
- Chain AB
- MITORIBOSOMAL PROTEIN US2M, MRPS2
- Chain AE
- MITORIBOSOMAL PROTEIN US5M, MRPS5
- Chain AF
- MITORIBOSOMAL PROTEIN BS6M, MRPS6
- Chain AI
- MITORIBOSOMAL PROTEIN US9M, MRPS9
- Chain AU
- MITORIBOSOMAL PROTEIN BS21M, MRPS21
- Chain Ab
- MITORIBOSOMAL PROTEIN MS23, MRPS23
- Chain Af
- MITORIBOSOMAL PROTEIN MS28, MRPS28
- Chain Am
- MITORIBOSOMAL PROTEIN MS37, MRPS37
Coloring options: