IL_5AJ4_036

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

5AJ4|1|AA|C|844, 5AJ4|1|AA|A|929

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_036 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.1268

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5AJ4|1|AA|C|843
5AJ4|1|AA|C|844
5AJ4|1|AA|G|845
*
5AJ4|1|AA|C|927
5AJ4|1|AA|A|928
5AJ4|1|AA|A|929
5AJ4|1|AA|G|930

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AV

P-SITE AND A-SITE TRNA

Chain AX

MRNA

Chain An

MITORIBOSOMAL PROTEIN MS38, MRPS38