IL_5AJ4_054

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

5AJ4|1|BA|G|347, 5AJ4|1|BA|G|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_054 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1283

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5AJ4|1|BA|G|241
5AJ4|1|BA|A|242
5AJ4|1|BA|A|243
5AJ4|1|BA|A|244
5AJ4|1|BA|C|245
*
5AJ4|1|BA|G|345
5AJ4|1|BA|U|346
5AJ4|1|BA|G|347
5AJ4|1|BA|A|348
5AJ4|1|BA|U|349
5AJ4|1|BA|A|350
5AJ4|1|BA|G|351
5AJ4|1|BA|C|352

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain BF

MITORIBOSOMAL PROTEIN UL4M, MRPL4

Chain BP

MITORIBOSOMAL PROTEIN UL15M, MRPL15

Chain Bn

MITORIBOSOMAL PROTEIN ML51, MRPL51