IL_5AJ4_056

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCA*UAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_056 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.14

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

5AJ4|1|BA|C|258
5AJ4|1|BA|C|259
5AJ4|1|BA|A|260
*
5AJ4|1|BA|U|315
5AJ4|1|BA|A|316
5AJ4|1|BA|G|317

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain B7

MITORIBOSOMAL PROTEIN BL34M, MRPL34

Chain BD

MITORIBOSOMAL PROTEIN UL2M, MRPL2

Chain Be

MITORIBOSOMAL PROTEIN ML41, MRPL41