IL_5AJ4_062

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAG*CAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_062 not in the Motif Atlas

Geometric match to IL_4V88_406

Geometric discrepancy: 0.3124

The information below is about IL_4V88_406

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

5AJ4|1|BA|U|500
5AJ4|1|BA|A|501
5AJ4|1|BA|G|502
*
5AJ4|1|BA|C|522
5AJ4|1|BA|A|523
5AJ4|1|BA|A|524

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain BJ

MITORIBOSOMAL PROTEIN UL10M, MRPL10

Chain BK

MITORIBOSOMAL PROTEIN UL11M, MRPL11

Chain Bq

MITORIBOSOMAL PROTEIN ML54, MRPL54