IL_5AJ4_072

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_072 not in the Motif Atlas

Homologous match to IL_7RQB_066

Geometric discrepancy: 0.1254

The information below is about IL_7RQB_066

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

5AJ4|1|BA|G|799
5AJ4|1|BA|G|800
5AJ4|1|BA|A|801
5AJ4|1|BA|A|802
*
5AJ4|1|BA|U|986
5AJ4|1|BA|C|987

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain BE

MITORIBOSOMAL PROTEIN UL3M, MRPL3

Chain BO

MITORIBOSOMAL PROTEIN UL14M, MRPL14