IL_5AJ4_088
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UCU*AAAA
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ4_088 not in the Motif Atlas
- Geometric match to IL_7RQB_031
- Geometric discrepancy: 0.2627
- The information below is about IL_7RQB_031
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_46796.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
5AJ4|1|BA|U|1190
5AJ4|1|BA|C|1191
5AJ4|1|BA|U|1192
*
5AJ4|1|BA|A|1206
5AJ4|1|BA|A|1207
5AJ4|1|BA|A|1208
5AJ4|1|BA|A|1209
Current chains
- Chain BA
- MITORIBOSOMAL 16S Ribosomal RNA
Nearby chains
- Chain B0
- MITORIBOSOMAL PROTEIN BL27M, MRPL27
- Chain B6
- MITORIBOSOMAL PROTEIN BL33M, MRPL33
- Chain B8
- MITORIBOSOMAL PROTEIN BL35M, MRPL35
- Chain BS
- MITORIBOSOMAL PROTEIN UL18M, MRPL18
- Chain Bb
- MITORIBOSOMAL PROTEIN ML38, MRPL38
Coloring options: