IL_5AJ4_103

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_103 not in the Motif Atlas

Geometric match to IL_6IA2_005

Geometric discrepancy: 0.1812

The information below is about IL_6IA2_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

5AJ4|1|BA|C|1485
5AJ4|1|BA|C|1486
5AJ4|1|BA|U|1487
*
5AJ4|1|BA|A|1493
5AJ4|1|BA|C|1494
5AJ4|1|BA|G|1495

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain BE

MITORIBOSOMAL PROTEIN UL3M, MRPL3

Chain BO

MITORIBOSOMAL PROTEIN UL14M, MRPL14

Chain BR

MITORIBOSOMAL PROTEIN BL17M, MRPL17

Chain BT

MITORIBOSOMAL PROTEIN BL19M, MRPL19