IL_5AJ4_104

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUAAU*AUUAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_104 not in the Motif Atlas

Geometric match to IL_4QLM_002

Geometric discrepancy: 0.3492

The information below is about IL_4QLM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74322.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

5AJ4|1|BA|G|1505
5AJ4|1|BA|A|1506
5AJ4|1|BA|U|1507
5AJ4|1|BA|A|1508
5AJ4|1|BA|A|1509
5AJ4|1|BA|U|1510
*
5AJ4|1|BA|A|1532
5AJ4|1|BA|U|1533
5AJ4|1|BA|U|1534
5AJ4|1|BA|A|1535
5AJ4|1|BA|A|1536
5AJ4|1|BA|C|1537

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain B9

MITORIBOSOMAL PROTEIN BL36M, MRPL36

Chain BN

MITORIBOSOMAL PROTEIN UL13M, MRPL13

Chain Bx

MITORIBOSOMAL PROTEIN ML66, MRPS18A