IL_5AJ4_107

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGG*CACA

Length

7 nucleotides

Bulged bases

5AJ4|1|AA|A|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_107 not in the Motif Atlas

Geometric match to IL_8C3A_468

Geometric discrepancy: 0.2768

The information below is about IL_8C3A_468

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

5AJ4|1|AA|U|525
5AJ4|1|AA|G|526
5AJ4|1|AA|G|527
*
5AJ4|1|AA|C|837
5AJ4|1|AA|A|838
5AJ4|1|AA|C|839
5AJ4|1|AA|A|840

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AE

MITORIBOSOMAL PROTEIN US5M, MRPS5

Chain AF

MITORIBOSOMAL PROTEIN BS6M, MRPS6

Chain An

MITORIBOSOMAL PROTEIN MS38, MRPS38