IL_5AJ4_111
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGAACUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ4_111 not in the Motif Atlas
- Homologous match to IL_4WF9_117
- Geometric discrepancy: 0.1005
- The information below is about IL_4WF9_117
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.2
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 11
Unit IDs
5AJ4|1|BA|G|799
5AJ4|1|BA|G|800
5AJ4|1|BA|A|801
5AJ4|1|BA|A|802
5AJ4|1|BA|C|803
5AJ4|1|BA|U|804
5AJ4|1|BA|C|805
5AJ4|1|BA|G|806
5AJ4|1|BA|G|807
*
5AJ4|1|BA|C|983
5AJ4|1|BA|U|984
5AJ4|1|BA|G|985
5AJ4|1|BA|U|986
5AJ4|1|BA|C|987
Current chains
- Chain BA
- MITORIBOSOMAL 16S Ribosomal RNA
Nearby chains
- Chain BE
- MITORIBOSOMAL PROTEIN UL3M, MRPL3
- Chain BO
- MITORIBOSOMAL PROTEIN UL14M, MRPL14
- Chain BT
- MITORIBOSOMAL PROTEIN BL19M, MRPL19
Coloring options: