IL_5AJ4_112
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UAUCAA*UCAUAACG
- Length
- 14 nucleotides
- Bulged bases
- 5AJ4|1|AA|U|112, 5AJ4|1|AA|U|138
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ4_112 not in the Motif Atlas
- Geometric match to IL_4LFB_011
- Geometric discrepancy: 0.1273
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.5
- Basepair signature
- cWW-cSS-tSS-L-cWW-tHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5AJ4|1|AA|U|110
5AJ4|1|AA|A|111
5AJ4|1|AA|U|112
5AJ4|1|AA|C|113
5AJ4|1|AA|A|114
5AJ4|1|AA|A|115
*
5AJ4|1|AA|U|135
5AJ4|1|AA|C|136
5AJ4|1|AA|A|137
5AJ4|1|AA|U|138
5AJ4|1|AA|A|139
5AJ4|1|AA|A|140
5AJ4|1|AA|C|141
5AJ4|1|AA|G|142
Current chains
- Chain AA
- MITORIBOSOMAL 12S Ribosomal RNA
Nearby chains
- Chain AL
- MITORIBOSOMAL PROTEIN US12M, MRPS12
- Chain AO
- MITORIBOSOMAL PROTEIN US15M, MRPS15
- Chain AQ
- MITORIBOSOMAL PROTEIN US17M, MRPS17
- Chain Aj
- MITORIBOSOMAL PROTEIN MS34, MRPS34
- Chain An
- MITORIBOSOMAL PROTEIN MS38, MRPS38
Coloring options: