IL_5AKA_006

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UCAGAG*CAGCAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_006 not in the Motif Atlas

Geometric match to IL_3LQX_002

Geometric discrepancy: 0.1738

The information below is about IL_3LQX_002

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_35186.1

Basepair signature

cWW-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5AKA|1|7|U|127
5AKA|1|7|C|128
5AKA|1|7|A|129
5AKA|1|7|G|130
5AKA|1|7|A|131
5AKA|1|7|G|132
*
5AKA|1|7|C|141
5AKA|1|7|A|142
5AKA|1|7|G|143
5AKA|1|7|C|144
5AKA|1|7|A|145
5AKA|1|7|G|146

Current chains

Chain 7

4.5S ribosomal RNA

Nearby chains

Chain 5

SIGNAL RECOGNITION PARTICLE PROTEIN