IL_5AKA_012
3D structure
- PDB id
- 5AKA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EM structure of ribosome-SRP-FtsY complex in closed state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AKA_012 not in the Motif Atlas
- Homologous match to IL_5J7L_245
- Geometric discrepancy: 0.0955
- The information below is about IL_5J7L_245
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5AKA|1|B|G|24
5AKA|1|B|U|25
5AKA|1|B|G|26
5AKA|1|B|G|27
5AKA|1|B|A|28
5AKA|1|B|U|29
5AKA|1|B|G|30
*
5AKA|1|B|C|510
5AKA|1|B|U|511
5AKA|1|B|G|512
5AKA|1|B|A|513
5AKA|1|B|A|514
5AKA|1|B|A|515
5AKA|1|B|C|516
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S RIBOSOMAL PROTEIN L32
- Chain Q
- 50S RIBOSOMAL PROTEIN L20
- Chain S
- 50S RIBOSOMAL PROTEIN L22
Coloring options: