IL_5AKA_017

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_017 not in the Motif Atlas

Homologous match to IL_5J7L_250

Geometric discrepancy: 0.0753

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5AKA|1|B|G|188
5AKA|1|B|G|189
5AKA|1|B|A|190
5AKA|1|B|A|191
5AKA|1|B|C|192
5AKA|1|B|U|193
5AKA|1|B|G|194
*
5AKA|1|B|C|201
5AKA|1|B|U|202
5AKA|1|B|A|203
5AKA|1|B|A|204
5AKA|1|B|G|205
5AKA|1|B|U|206
5AKA|1|B|A|207
5AKA|1|B|C|208

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L

50S RIBOSOMAL PROTEIN L15

Chain Z

50S RIBOSOMAL PROTEIN L31