IL_5AKA_020

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

AGC*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AGC,GCU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_020 not in the Motif Atlas

Geometric match to IL_1L9A_009

Geometric discrepancy: 0.2895

The information below is about IL_1L9A_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

5AKA|1|B|A|272
5AKA|1|B|G|273
5AKA|1|B|C|274
*
5AKA|1|B|G|363
5AKA|1|B|C|364
5AKA|1|B|U|365

Current chains

Chain B

23S ribosomal RNA

Nearby chains