IL_5AKA_026

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

5AKA|1|B|A|504, 5AKA|1|B|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_026 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0941

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

5AKA|1|B|G|481
5AKA|1|B|A|482
5AKA|1|B|A|483
5AKA|1|B|C|484
*
5AKA|1|B|G|496
5AKA|1|B|A|497
5AKA|1|B|G|498
5AKA|1|B|U|499
5AKA|1|B|G|500
5AKA|1|B|A|501
5AKA|1|B|A|502
5AKA|1|B|A|503
5AKA|1|B|A|504
5AKA|1|B|A|505
5AKA|1|B|G|506
5AKA|1|B|A|507
5AKA|1|B|A|508
5AKA|1|B|C|509

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 5

SIGNAL RECOGNITION PARTICLE PROTEIN

Chain S

50S RIBOSOMAL PROTEIN L22

Chain U

50S RIBOSOMAL PROTEIN L24