IL_5AKA_027

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_027 not in the Motif Atlas

Homologous match to IL_5J7L_256

Geometric discrepancy: 0.1083

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5AKA|1|B|G|536
5AKA|1|B|G|537
5AKA|1|B|A|538
5AKA|1|B|G|539
*
5AKA|1|B|U|554
5AKA|1|B|G|555
5AKA|1|B|A|556
5AKA|1|B|C|557

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain J

50S RIBOSOMAL PROTEIN L13

Chain Q

50S RIBOSOMAL PROTEIN L20

Chain R

50S RIBOSOMAL PROTEIN L21