IL_5AKA_049

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

5AKA|1|B|A|1143

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_049 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1328

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

5AKA|1|B|U|1018
5AKA|1|B|U|1019
5AKA|1|B|A|1020
5AKA|1|B|A|1021
5AKA|1|B|G|1022
5AKA|1|B|U|1023
5AKA|1|B|G|1024
*
5AKA|1|B|C|1140
5AKA|1|B|U|1141
5AKA|1|B|A|1142
5AKA|1|B|A|1143
5AKA|1|B|A|1144

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain G

50S RIBOSOMAL PROTEIN L6

Chain J

50S RIBOSOMAL PROTEIN L13