IL_5AKA_050
3D structure
- PDB id
- 5AKA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EM structure of ribosome-SRP-FtsY complex in closed state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 5AKA|1|B|A|1127, 5AKA|1|B|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AKA_050 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.0899
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
5AKA|1|B|G|1024
5AKA|1|B|G|1025
5AKA|1|B|G|1026
5AKA|1|B|A|1027
5AKA|1|B|A|1028
5AKA|1|B|A|1029
5AKA|1|B|C|1030
*
5AKA|1|B|G|1124
5AKA|1|B|G|1125
5AKA|1|B|A|1126
5AKA|1|B|A|1127
5AKA|1|B|G|1128
5AKA|1|B|A|1129
5AKA|1|B|U|1130
5AKA|1|B|G|1131
5AKA|1|B|U|1132
5AKA|1|B|A|1133
5AKA|1|B|A|1134
5AKA|1|B|C|1135
5AKA|1|B|G|1136
5AKA|1|B|G|1137
5AKA|1|B|G|1138
5AKA|1|B|G|1139
5AKA|1|B|C|1140
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S RIBOSOMAL PROTEIN L36
- Chain A
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 50S RIBOSOMAL PROTEIN L3
- Chain J
- 50S RIBOSOMAL PROTEIN L13
- Chain M
- 50S RIBOSOMAL PROTEIN L16
Coloring options: