IL_5AKA_052

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

AUG*CAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AUG,CAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_052 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1956

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5AKA|1|B|A|1057
5AKA|1|B|U|1058
5AKA|1|B|G|1059
*
5AKA|1|B|C|1079
5AKA|1|B|A|1080
5AKA|1|B|U|1081

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain I

50S RIBOSOMAL PROTEIN L11