IL_5AKA_056

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

5AKA|1|B|A|1205

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_056 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.2659

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

5AKA|1|B|G|1202
5AKA|1|B|U|1203
5AKA|1|B|A|1204
5AKA|1|B|A|1205
5AKA|1|B|G|1206
*
5AKA|1|B|U|1240
5AKA|1|B|A|1241
5AKA|1|B|U|1242
5AKA|1|B|C|1243

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain E

50S RIBOSOMAL PROTEIN L4

Chain L

50S RIBOSOMAL PROTEIN L15