IL_5AKA_075

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

5AKA|1|B|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_075 not in the Motif Atlas

Geometric match to IL_5J7L_307

Geometric discrepancy: 0.0738

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

5AKA|1|B|A|1669
5AKA|1|B|C|1670
5AKA|1|B|U|1671
5AKA|1|B|A|1672
5AKA|1|B|G|1673
5AKA|1|B|G|1674
*
5AKA|1|B|C|1990
5AKA|1|B|U|1991
5AKA|1|B|G|1992
5AKA|1|B|U|1993

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L3

Chain K

50S RIBOSOMAL PROTEIN L14