IL_5AKA_076

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5AKA|1|B|G|1699

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_076 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0747

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5AKA|1|B|C|1686
5AKA|1|B|G|1687
5AKA|1|B|U|1688
5AKA|1|B|A|1689
5AKA|1|B|A|1690
5AKA|1|B|C|1691
*
5AKA|1|B|G|1696
5AKA|1|B|G|1697
5AKA|1|B|A|1698
5AKA|1|B|G|1699
5AKA|1|B|A|1700
5AKA|1|B|A|1701
5AKA|1|B|G|1702

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2