IL_5AKA_087

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

5AKA|1|B|A|1938, 5AKA|1|B|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_087 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.1307

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

5AKA|1|B|C|1934
5AKA|1|B|G|1935
5AKA|1|B|A|1936
5AKA|1|B|A|1937
5AKA|1|B|A|1938
5AKA|1|B|U|1939
5AKA|1|B|U|1940
5AKA|1|B|C|1941
5AKA|1|B|C|1942
5AKA|1|B|U|1943
5AKA|1|B|U|1944
5AKA|1|B|G|1945
*
5AKA|1|B|C|1961
5AKA|1|B|C|1962
5AKA|1|B|U|1963
5AKA|1|B|G|1964

Current chains

Chain B

23S ribosomal RNA

Nearby chains