IL_5AKA_089

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

5AKA|1|B|C|2055, 5AKA|1|B|U|2613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_089 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.1055

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

5AKA|1|B|A|2054
5AKA|1|B|C|2055
5AKA|1|B|G|2056
*
5AKA|1|B|C|2612
5AKA|1|B|U|2613
5AKA|1|B|A|2614
5AKA|1|B|U|2615

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 0

50S RIBOSOMAL PROTEIN L32

Chain D

50S RIBOSOMAL PROTEIN L3

Chain S

50S RIBOSOMAL PROTEIN L22