IL_5AKA_102

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_102 not in the Motif Atlas

Geometric match to IL_5J7L_337

Geometric discrepancy: 0.0936

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

5AKA|1|B|A|2459
5AKA|1|B|U|2460
5AKA|1|B|A|2461
*
5AKA|1|B|U|2489
5AKA|1|B|G|2490
5AKA|1|B|U|2491
5AKA|1|B|U|2492
5AKA|1|B|U|2493

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain M

50S RIBOSOMAL PROTEIN L16