IL_5AKA_106

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

5AKA|1|B|A|2572, 5AKA|1|B|C|2573

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_106 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.0909

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

5AKA|1|B|C|2512
5AKA|1|B|A|2513
*
5AKA|1|B|U|2571
5AKA|1|B|A|2572
5AKA|1|B|C|2573
5AKA|1|B|G|2574

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L3