IL_5AKA_115

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_115 not in the Motif Atlas

Homologous match to IL_5J7L_351

Geometric discrepancy: 0.1179

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

5AKA|1|B|C|2806
5AKA|1|B|U|2807
5AKA|1|B|G|2808
5AKA|1|B|A|2809
5AKA|1|B|A|2810
5AKA|1|B|G|2811
*
5AKA|1|B|C|2889
5AKA|1|B|G|2890
5AKA|1|B|U|2891
5AKA|1|B|G|2892

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 0

50S RIBOSOMAL PROTEIN L32

Chain D

50S RIBOSOMAL PROTEIN L3

Chain S

50S RIBOSOMAL PROTEIN L22