IL_5AKA_117

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

5AKA|1|B|A|2872, 5AKA|1|B|A|2873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_117 not in the Motif Atlas

Homologous match to IL_5J7L_353

Geometric discrepancy: 0.1263

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

5AKA|1|B|G|2843
5AKA|1|B|G|2844
5AKA|1|B|U|2845
5AKA|1|B|G|2846
*
5AKA|1|B|C|2870
5AKA|1|B|U|2871
5AKA|1|B|A|2872
5AKA|1|B|A|2873
5AKA|1|B|C|2874

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain N

50S RIBOSOMAL PROTEIN L17

Chain P

50S RIBOSOMAL PROTEIN L19