IL_5AKA_118

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_118 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.1695

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

5AKA|1|B|U|2847
5AKA|1|B|G|2848
5AKA|1|B|U|2849
5AKA|1|B|A|2850
5AKA|1|B|A|2851
5AKA|1|B|G|2852
*
5AKA|1|B|U|2865
5AKA|1|B|U|2866
5AKA|1|B|G|2867
5AKA|1|B|A|2868
5AKA|1|B|G|2869

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain N

50S RIBOSOMAL PROTEIN L17

Chain P

50S RIBOSOMAL PROTEIN L19