IL_5AKA_122

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

AGCCUGAAUCAGUGUG*CAUGCUGUGAGCU

Length

29 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AKA|1|B|A|272
5AKA|1|B|G|273
5AKA|1|B|C|274
5AKA|1|B|C|275
5AKA|1|B|U|276
5AKA|1|B|G|277
5AKA|1|B|A|278
5AKA|1|B|A|279
5AKA|1|B|U|280
5AKA|1|B|C|281
5AKA|1|B|A|282
5AKA|1|B|G|283
5AKA|1|B|U|284
5AKA|1|B|G|285
5AKA|1|B|U|286
5AKA|1|B|G|287
*
5AKA|1|B|C|353
5AKA|1|B|A|354
5AKA|1|B|U|355
5AKA|1|B|G|356
5AKA|1|B|C|357
5AKA|1|B|U|358
5AKA|1|B|G|359
5AKA|1|B|U|360
5AKA|1|B|G|361
5AKA|1|B|A|362
5AKA|1|B|G|363
5AKA|1|B|C|364
5AKA|1|B|U|365

Current chains

Chain B

23S ribosomal RNA

Nearby chains